HL_7TOP_082

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGUAACUAUGACU

Length

13 nucleotides

Bulged bases

7TOP|1|A25S|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_082 not in the Motif Atlas

Homologous match to HL_8P9A_160

Geometric discrepancy: 0.3071

The information below is about HL_8P9A_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70658.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7TOP|1|A25S|A|2252
7TOP|1|A25S|G|2253
7TOP|1|A25S|U|2254
7TOP|1|A25S|A|2255
7TOP|1|A25S|A|2256
7TOP|1|A25S|C|2257
7TOP|1|A25S|U|2258
7TOP|1|A25S|A|2259
7TOP|1|A25S|U|2260
7TOP|1|A25S|G|2261
7TOP|1|A25S|A|2262
7TOP|1|A25S|C|2263
7TOP|1|A25S|U|2264

Current chains

Chain A25S

25S rRNA

Nearby chains