HL_7TOP_087

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7TOP|1|A25S|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_087 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.169

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7TOP|1|A25S|A|2897
7TOP|1|A25S|G|2898
7TOP|1|A25S|C|2899
7TOP|1|A25S|A|2900
7TOP|1|A25S|G|2901
7TOP|1|A25S|A|2902
7TOP|1|A25S|A|2903
7TOP|1|A25S|U|2904

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9-A

Chain AL40

Ubiquitin-60S ribosomal protein L40