HL_7TOQ_009
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 7TOQ|1|A18S|A|448, 7TOQ|1|A18S|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOQ_009 not in the Motif Atlas
- Geometric match to HL_4V88_195
- Geometric discrepancy: 0.1926
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7TOQ|1|A18S|C|441
7TOQ|1|A18S|C|442
7TOQ|1|A18S|U|443
7TOQ|1|A18S|G|444
7TOQ|1|A18S|A|445
7TOQ|1|A18S|G|446
7TOQ|1|A18S|A|447
7TOQ|1|A18S|A|448
7TOQ|1|A18S|A|449
7TOQ|1|A18S|C|450
7TOQ|1|A18S|G|451
7TOQ|1|A18S|G|452
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS04
- 40S ribosomal protein S4
- Chain AS06
- 40S ribosomal protein S6
- Chain AS08
- 40S ribosomal protein S8
- Chain AS24
- 40S ribosomal protein S24
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