HL_7TOQ_014

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_014 not in the Motif Atlas

Geometric match to HL_4V88_200

Geometric discrepancy: 0.1947

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TOQ|1|A18S|C|618
7TOQ|1|A18S|A|619
7TOQ|1|A18S|G|620
7TOQ|1|A18S|C|621
7TOQ|1|A18S|C|622
7TOQ|1|A18S|G|623

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS23

40S ribosomal protein S23

Chain MRNA

RNA (5'-R(*CP*AP*CP*AP*UP*GP*UP*UP*CP*C)-3')