HL_7TOQ_019
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOQ_019 not in the Motif Atlas
- Geometric match to HL_4V88_206
- Geometric discrepancy: 0.2033
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
7TOQ|1|A18S|A|957
7TOQ|1|A18S|G|958
7TOQ|1|A18S|G|959
7TOQ|1|A18S|U|960
7TOQ|1|A18S|G|961
7TOQ|1|A18S|A|962
7TOQ|1|A18S|A|963
7TOQ|1|A18S|A|964
7TOQ|1|A18S|U|965
7TOQ|1|A18S|U|966
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS05
- Ribosomal protein S5
- Chain AS14
- 40S ribosomal protein S14
- Chain MRNA
- RNA (5'-R(*CP*AP*CP*AP*UP*GP*UP*UP*CP*C)-3')
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