HL_7TOQ_028

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7TOQ|1|A18S|U|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_028 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.2101

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

7TOQ|1|A18S|G|1366
7TOQ|1|A18S|U|1367
7TOQ|1|A18S|U|1368
7TOQ|1|A18S|A|1369
7TOQ|1|A18S|A|1370
7TOQ|1|A18S|U|1371
7TOQ|1|A18S|U|1372
7TOQ|1|A18S|C|1373

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS17

40S ribosomal protein S17