HL_7TOQ_041

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

7TOQ|1|A25S|U|224, 7TOQ|1|A25S|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_041 not in the Motif Atlas

Homologous match to HL_8C3A_006

Geometric discrepancy: 0.1103

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7TOQ|1|A25S|C|222
7TOQ|1|A25S|G|223
7TOQ|1|A25S|U|224
7TOQ|1|A25S|G|225
7TOQ|1|A25S|G|226

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL26

60S ribosomal protein L26