HL_7TOQ_043
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 7TOQ|1|A25S|G|294, 7TOQ|1|A25S|A|295, 7TOQ|1|A25S|A|296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOQ_043 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.1292
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
7TOQ|1|A25S|C|289
7TOQ|1|A25S|U|290
7TOQ|1|A25S|U|291
7TOQ|1|A25S|G|292
7TOQ|1|A25S|G|293
7TOQ|1|A25S|G|294
7TOQ|1|A25S|A|295
7TOQ|1|A25S|A|296
7TOQ|1|A25S|U|297
7TOQ|1|A25S|G|298
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain AL13
- eL13
- Chain AL15
- 60S ribosomal protein L15
- Chain AL18
- eL18
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL42
- eL42
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