HL_7TOQ_054
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCAGUCCGCC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOQ_054 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.3944
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7TOQ|1|A25S|G|1434
7TOQ|1|A25S|G|1435
7TOQ|1|A25S|C|1436
7TOQ|1|A25S|A|1443
7TOQ|1|A25S|G|1444
7TOQ|1|A25S|U|1445
7TOQ|1|A25S|C|1446
7TOQ|1|A25S|C|1447
7TOQ|1|A25S|G|1448
7TOQ|1|A25S|C|1449
7TOQ|1|A25S|C|1450
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain AL04
- 60S ribosomal protein L4
- Chain AL18
- eL18
- Chain AL29
- eL29
Coloring options: