HL_7TOQ_055

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

7TOQ|1|A25S|C|1481, 7TOQ|1|A25S|G|1482, 7TOQ|1|A25S|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_055 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.2917

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7TOQ|1|A25S|G|1479
7TOQ|1|A25S|C|1480
7TOQ|1|A25S|C|1481
7TOQ|1|A25S|G|1482
7TOQ|1|A25S|C|1483
7TOQ|1|A25S|G|1484
7TOQ|1|A25S|C|1485
7TOQ|1|A25S|C|1486

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL13

eL13

Chain AL36

60S ribosomal protein L36