HL_7TOQ_104

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_104 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1585

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7TOQ|1|A25S|U|4646
7TOQ|1|A25S|G|4647
7TOQ|1|A25S|A|4648
7TOQ|1|A25S|G|4649
7TOQ|1|A25S|G|4650
7TOQ|1|A25S|A|4651

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AL22

eL22

Chain AL31

60S ribosomal protein L31