HL_7TOQ_108

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

7TOQ|1|A25S|C|5027

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_108 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3512

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7TOQ|1|A25S|C|5021
7TOQ|1|A25S|U|5022
7TOQ|1|A25S|C|5023
7TOQ|1|A25S|C|5024
7TOQ|1|A25S|C|5025
7TOQ|1|A25S|U|5026
7TOQ|1|A25S|C|5027
7TOQ|1|A25S|G|5028

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AS08

40S ribosomal protein S8