HL_7TOR_020
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOR_020 not in the Motif Atlas
- Geometric match to HL_4LFB_017
- Geometric discrepancy: 0.2269
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
7TOR|1|A18S|G|1054
7TOR|1|A18S|A|1055
7TOR|1|A18S|U|1056
7TOR|1|A18S|C|1057
7TOR|1|A18S|A|1058
7TOR|1|A18S|G|1059
7TOR|1|A18S|A|1060
7TOR|1|A18S|U|1061
7TOR|1|A18S|A|1062
7TOR|1|A18S|C|1063
7TOR|1|A18S|C|1064
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS14
- uS11
- Chain AS26
- eS26
- Chain ETRN
- Transfer RNA; tRNA
- Chain MRNA
- mRNA
- Chain PTRN
- Transfer RNA; tRNA
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