HL_7TOR_025

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7TOR|1|A18S|U|1300, 7TOR|1|A18S|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_025 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.4448

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7TOR|1|A18S|A|1295
7TOR|1|A18S|U|1296
7TOR|1|A18S|U|1297
7TOR|1|A18S|G|1298
7TOR|1|A18S|A|1299
7TOR|1|A18S|U|1300
7TOR|1|A18S|A|1301
7TOR|1|A18S|G|1302
7TOR|1|A18S|C|1303
7TOR|1|A18S|U|1304

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS15

40S ribosomal protein S15

Chain AS29

40S ribosomal protein S29

Chain AS31

40S ribosomal protein S27a