HL_7TOR_056
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACGUGCGAAU
- Length
- 10 nucleotides
- Bulged bases
- 7TOR|1|A28S|U|1596, 7TOR|1|A28S|A|1600, 7TOR|1|A28S|A|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOR_056 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.0952
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
7TOR|1|A28S|A|1593
7TOR|1|A28S|C|1594
7TOR|1|A28S|G|1595
7TOR|1|A28S|U|1596
7TOR|1|A28S|G|1597
7TOR|1|A28S|C|1598
7TOR|1|A28S|G|1599
7TOR|1|A28S|A|1600
7TOR|1|A28S|A|1601
7TOR|1|A28S|U|1602
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL03
- 60S ribosomal protein L3
- Chain AL17
- 60S ribosomal protein L17
- Chain AL37
- 60S ribosomal protein L37
- Chain GR1
- GR20, ALS/FTD dipeptide repeat protein
Coloring options: