HL_7TOR_086

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

7TOR|1|A28S|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_086 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.2521

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7TOR|1|A28S|G|3757
7TOR|1|A28S|U|3758
7TOR|1|A28S|A|3759
7TOR|1|A28S|A|3760
7TOR|1|A28S|C|3761
7TOR|1|A28S|U|3762
7TOR|1|A28S|A|3763
7TOR|1|A28S|U|3764
7TOR|1|A28S|G|3765
7TOR|1|A28S|A|3766
7TOR|1|A28S|C|3767

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain PTRN

Transfer RNA; tRNA