HL_7TOR_092

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

7TOR|1|A28S|A|4214, 7TOR|1|A28S|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_092 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1217

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7TOR|1|A28S|U|4210
7TOR|1|A28S|C|4211
7TOR|1|A28S|A|4212
7TOR|1|A28S|A|4213
7TOR|1|A28S|A|4214
7TOR|1|A28S|C|4215
7TOR|1|A28S|G|4216
7TOR|1|A28S|G|4217
7TOR|1|A28S|U|4218
7TOR|1|A28S|A|4219
7TOR|1|A28S|A|4220
7TOR|1|A28S|C|4221
7TOR|1|A28S|G|4222

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL21

60S ribosomal protein L21

Chain AL29

eL29