HL_7TOS_005

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

7TOS|1|16S|U|209, 7TOS|1|16S|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_005 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.332

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7TOS|1|16S|C|206
7TOS|1|16S|C|207
7TOS|1|16S|U|208
7TOS|1|16S|U|209
7TOS|1|16S|C|210
7TOS|1|16S|G|211
7TOS|1|16S|G|212
7TOS|1|16S|G|213

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains