HL_7TOS_006

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7TOS|1|16S|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1795

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7TOS|1|16S|G|259
7TOS|1|16S|G|260
7TOS|1|16S|U|261
7TOS|1|16S|A|262
7TOS|1|16S|A|263
7TOS|1|16S|C|264
7TOS|1|16S|G|265
7TOS|1|16S|G|266
7TOS|1|16S|C|267

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S17

30S ribosomal protein S17

Chain S20

30S ribosomal protein S20