HL_7TOS_018

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

7TOS|1|16S|U|842, 7TOS|1|16S|G|844, 7TOS|1|16S|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_018 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.354

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7TOS|1|16S|C|840
7TOS|1|16S|C|841
7TOS|1|16S|U|842
7TOS|1|16S|U|843
7TOS|1|16S|G|844
7TOS|1|16S|A|845
7TOS|1|16S|G|846

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S18

30S ribosomal protein S18