HL_7TOS_025

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7TOS|1|16S|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1413

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

7TOS|1|16S|G|1089
7TOS|1|16S|U|1090
7TOS|1|16S|U|1091
7TOS|1|16S|A|1092
7TOS|1|16S|A|1093
7TOS|1|16S|G|1094
7TOS|1|16S|U|1095
7TOS|1|16S|C|1096

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S02

30S ribosomal protein S2

Chain S07

30S ribosomal protein S7

Chain S21

Ribosomal protein S21