HL_7TOS_029

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_029 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.1201

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7TOS|1|16S|C|1314
7TOS|1|16S|U|1315
7TOS|1|16S|G|1316
7TOS|1|16S|C|1317
7TOS|1|16S|A|1318
7TOS|1|16S|A|1319
7TOS|1|16S|C|1320
7TOS|1|16S|U|1321
7TOS|1|16S|C|1322
7TOS|1|16S|G|1323

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S13

30S ribosomal protein S13

Chain S14

30S ribosomal protein S14

Chain S19

30S ribosomal protein S19