HL_7TOS_042

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

7TOS|1|23S|G|329, 7TOS|1|23S|A|330, 7TOS|1|23S|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_042 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1548

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7TOS|1|23S|G|327
7TOS|1|23S|U|328
7TOS|1|23S|G|329
7TOS|1|23S|A|330
7TOS|1|23S|C|331
7TOS|1|23S|A|332
7TOS|1|23S|G|333
7TOS|1|23S|C|334
7TOS|1|23S|C|335

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L04

50S ribosomal protein L4

Chain L24

Ribosomal protein L24