HL_7TOS_044

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7TOS|1|23S|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_044 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.11

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7TOS|1|23S|G|410
7TOS|1|23S|G|411
7TOS|1|23S|A|412
7TOS|1|23S|C|413
7TOS|1|23S|C|414
7TOS|1|23S|A|415
7TOS|1|23S|U|416
7TOS|1|23S|C|417

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains