HL_7TOS_057

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

7TOS|1|23S|U|958, 7TOS|1|23S|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_057 not in the Motif Atlas

Geometric match to HL_4WF9_027

Geometric discrepancy: 0.1565

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7TOS|1|23S|U|955
7TOS|1|23S|G|956
7TOS|1|23S|C|957
7TOS|1|23S|U|958
7TOS|1|23S|A|959
7TOS|1|23S|A|960
7TOS|1|23S|C|961
7TOS|1|23S|G|962

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 5S

5S ribosomal RNA; 5S rRNA

Chain L16

50S ribosomal protein L16