HL_7TOS_084

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7TOS|1|23S|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_084 not in the Motif Atlas

Geometric match to HL_7A0S_052

Geometric discrepancy: 0.1055

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

7TOS|1|23S|C|2248
7TOS|1|23S|U|2249
7TOS|1|23S|G|2250
7TOS|1|23S|G|2251
7TOS|1|23S|G|2252
7TOS|1|23S|G|2253
7TOS|1|23S|C|2254
7TOS|1|23S|G|2255
7TOS|1|23S|G|2256

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L16

50S ribosomal protein L16

Chain L27

50S ribosomal protein L27

Chain PR

PR20, ALS/FTD dipeptide repeat protein