HL_7TOS_085

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7TOS|1|23S|A|2268, 7TOS|1|23S|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_085 not in the Motif Atlas

Geometric match to HL_5J7L_187

Geometric discrepancy: 0.1209

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7TOS|1|23S|C|2264
7TOS|1|23S|U|2265
7TOS|1|23S|A|2266
7TOS|1|23S|A|2267
7TOS|1|23S|A|2268
7TOS|1|23S|G|2269
7TOS|1|23S|A|2270
7TOS|1|23S|G|2271
7TOS|1|23S|U|2272
7TOS|1|23S|A|2273
7TOS|1|23S|A|2274
7TOS|1|23S|C|2275
7TOS|1|23S|G|2276

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L16

50S ribosomal protein L16

Chain L27

50S ribosomal protein L27