HL_7TOS_090

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

7TOS|1|23S|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_090 not in the Motif Atlas

Geometric match to HL_7A0S_058

Geometric discrepancy: 0.1199

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7TOS|1|23S|U|2404
7TOS|1|23S|G|2405
7TOS|1|23S|A|2406
7TOS|1|23S|A|2407
7TOS|1|23S|U|2408
7TOS|1|23S|G|2409
7TOS|1|23S|G|2410
7TOS|1|23S|A|2411
7TOS|1|23S|A|2412
7TOS|1|23S|G|2413

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L15

50S ribosomal protein L15