HL_7TOS_092

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

7TOS|1|23S|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_092 not in the Motif Atlas

Geometric match to HL_5J7L_194

Geometric discrepancy: 0.1199

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7TOS|1|23S|U|2528
7TOS|1|23S|G|2529
7TOS|1|23S|A|2530
7TOS|1|23S|A|2531
7TOS|1|23S|G|2532
7TOS|1|23S|U|2533
7TOS|1|23S|A|2534
7TOS|1|23S|G|2535

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L06

50S ribosomal protein L6

Chain L36

50S ribosomal protein L36