HL_7TOS_097

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7TOS|1|23S|G|2751, 7TOS|1|23S|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_097 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.088

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7TOS|1|23S|C|2745
7TOS|1|23S|U|2746
7TOS|1|23S|G|2747
7TOS|1|23S|A|2748
7TOS|1|23S|A|2749
7TOS|1|23S|A|2750
7TOS|1|23S|G|2751
7TOS|1|23S|C|2752
7TOS|1|23S|A|2753
7TOS|1|23S|U|2754
7TOS|1|23S|C|2755
7TOS|1|23S|U|2756
7TOS|1|23S|A|2757
7TOS|1|23S|A|2758
7TOS|1|23S|G|2759

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L06

50S ribosomal protein L6

Chain L13

50S ribosomal protein L13

Chain L36

50S ribosomal protein L36