HL_7TOS_098

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

7TOS|1|23S|U|2797, 7TOS|1|23S|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_098 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.3684

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

7TOS|1|23S|C|2795
7TOS|1|23S|U|2796
7TOS|1|23S|U|2797
7TOS|1|23S|U|2798
7TOS|1|23S|A|2799
7TOS|1|23S|A|2800
7TOS|1|23S|G|2801

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains