HL_7TQL_017

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

7TQL|1|2|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TQL_017 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.5255

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7TQL|1|2|U|885
7TQL|1|2|A|886
7TQL|1|2|U|887
7TQL|1|2|U|888
7TQL|1|2|U|889
7TQL|1|2|U|890
7TQL|1|2|G|891
7TQL|1|2|U|892
7TQL|1|2|U|893
7TQL|1|2|G|894
7TQL|1|2|G|895
7TQL|1|2|U|896
7TQL|1|2|U|897
7TQL|1|2|U|898
7TQL|1|2|U|899
7TQL|1|2|C|900
7TQL|1|2|G|901

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S11