HL_7TQL_025

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7TQL|1|2|U|1300, 7TQL|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TQL_025 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2523

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7TQL|1|2|A|1295
7TQL|1|2|U|1296
7TQL|1|2|U|1297
7TQL|1|2|G|1298
7TQL|1|2|A|1299
7TQL|1|2|U|1300
7TQL|1|2|A|1301
7TQL|1|2|G|1302
7TQL|1|2|C|1303
7TQL|1|2|U|1304

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S15

Chain f

ribosomal protein uS14

Chain g

40S ribosomal protein S27a