HL_7TQL_027

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7TQL|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TQL_027 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1144

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7TQL|1|2|G|1366
7TQL|1|2|U|1367
7TQL|1|2|U|1368
7TQL|1|2|A|1369
7TQL|1|2|A|1370
7TQL|1|2|U|1371
7TQL|1|2|U|1372
7TQL|1|2|C|1373

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

ribosomal protein eS17