HL_7TTU_004

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TTU_004 not in the Motif Atlas

Geometric match to HL_5AOX_001

Geometric discrepancy: 0.2408

The information below is about HL_5AOX_001

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7TTU|1|1|A|136
7TTU|1|1|G|137
7TTU|1|1|U|138
7TTU|1|1|U|139
7TTU|1|1|A|140
7TTU|1|1|U|141
7TTU|1|1|G|142
7TTU|1|1|U|143

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L23