HL_7TUT_028

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

7TUT|1|K|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TUT_028 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.3132

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7TUT|1|K|C|1816
7TUT|1|K|U|1817
7TUT|1|K|G|1818
7TUT|1|K|G|1819
7TUT|1|K|U|1820
7TUT|1|K|G|1821
7TUT|1|K|U|1822
7TUT|1|K|G|1823

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain T

eL21

Chain b

eL29