HL_7U2I_106

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

7U2I|1|1x|C|16, 7U2I|1|1x|G|18, 7U2I|1|1x|G|19, 7U2I|1|1x|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7U2I_106 not in the Motif Atlas

Geometric match to HL_6CFJ_106

Geometric discrepancy: 0.0997

The information below is about HL_6CFJ_106

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

7U2I|1|1x|C|13
7U2I|1|1x|A|14
7U2I|1|1x|G|15
7U2I|1|1x|C|16
7U2I|1|1x|C|17
7U2I|1|1x|U|17|||A
7U2I|1|1x|G|18
7U2I|1|1x|G|19
7U2I|1|1x|U|20
7U2I|1|1x|A|21
7U2I|1|1x|G|22

Current chains

Chain 1x

P-site Aminoacyl-tRNA fMet-NH-tRNAmet

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1G

50S ribosomal protein L5