HL_7U2J_176

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7U2J|1|2A|G|2751, 7U2J|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7U2J_176 not in the Motif Atlas

Geometric match to HL_7RQB_066

Geometric discrepancy: 0.0778

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

7U2J|1|2A|C|2745
7U2J|1|2A|U|2746
7U2J|1|2A|G|2747
7U2J|1|2A|A|2748
7U2J|1|2A|A|2749
7U2J|1|2A|A|2750
7U2J|1|2A|G|2751
7U2J|1|2A|C|2752
7U2J|1|2A|A|2753
7U2J|1|2A|U|2754
7U2J|1|2A|C|2755
7U2J|1|2A|U|2756
7U2J|1|2A|A|2757
7U2J|1|2A|A|2758
7U2J|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13