HL_7UCJ_029

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

7UCJ|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_029 not in the Motif Atlas

Geometric match to HL_5J7L_024

Geometric discrepancy: 0.3985

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7UCJ|1|5|C|1816
7UCJ|1|5|U|1817
7UCJ|1|5|G|1818
7UCJ|1|5|G|1819
7UCJ|1|5|U|1820
7UCJ|1|5|G|1821
7UCJ|1|5|U|1822
7UCJ|1|5|G|1823

Current chains

Chain 5

28s rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L29