HL_7UCJ_051

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

7UCJ|1|5|A|3642, 7UCJ|1|5|A|3643, 7UCJ|1|5|U|3644, 7UCJ|1|5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_051 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1684

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7UCJ|1|5|U|3639
7UCJ|1|5|U|3640
7UCJ|1|5|U|3641
7UCJ|1|5|A|3642
7UCJ|1|5|A|3643
7UCJ|1|5|U|3644
7UCJ|1|5|U|3645
7UCJ|1|5|A|3646
7UCJ|1|5|A|3647
7UCJ|1|5|A|3648
7UCJ|1|5|A|3649

Current chains

Chain 5

28s rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain j

60S ribosomal protein L37