3D structure

PDB id
7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUUAAUUAAAA
Length
11 nucleotides
Bulged bases
7UCJ|1|5|A|3642, 7UCJ|1|5|A|3643, 7UCJ|1|5|U|3644, 7UCJ|1|5|A|3648
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7UCJ_051 not in the Motif Atlas
Homologous match to HL_8C3A_046
Geometric discrepancy: 0.1684
The information below is about HL_8C3A_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_43613.6
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

7UCJ|1|5|U|3639
7UCJ|1|5|U|3640
7UCJ|1|5|U|3641
7UCJ|1|5|A|3642
7UCJ|1|5|A|3643
7UCJ|1|5|U|3644
7UCJ|1|5|U|3645
7UCJ|1|5|A|3646
7UCJ|1|5|A|3647
7UCJ|1|5|A|3648
7UCJ|1|5|A|3649

Current chains

Chain 5
28s rRNA

Nearby chains

Chain A
60S ribosomal protein L8
Chain j
60S ribosomal protein L37

Coloring options:


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