HL_7UCJ_055

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7UCJ|1|5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_055 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0887

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7UCJ|1|5|U|3796
7UCJ|1|5|C|3797
7UCJ|1|5|U|3798
7UCJ|1|5|A|3799
7UCJ|1|5|A|3800
7UCJ|1|5|U|3801
7UCJ|1|5|U|3802
7UCJ|1|5|A|3803
7UCJ|1|5|G|3804

Current chains

Chain 5

28s rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain V

60S ribosomal protein L23