HL_7UCJ_066

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7UCJ|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_066 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.0916

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7UCJ|1|5|A|4474
7UCJ|1|5|G|4475
7UCJ|1|5|C|4476
7UCJ|1|5|A|4477
7UCJ|1|5|G|4478
7UCJ|1|5|A|4479
7UCJ|1|5|A|4480
7UCJ|1|5|U|4481

Current chains

Chain 5

28s rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain m

60S ribosomal protein L40