HL_7UCJ_081

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_081 not in the Motif Atlas

Geometric match to HL_2D6F_005

Geometric discrepancy: 0.37

The information below is about HL_2D6F_005

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_91620.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7UCJ|1|8|G|121
7UCJ|1|8|G|122
7UCJ|1|8|U|123
7UCJ|1|8|U|124
7UCJ|1|8|C|125
7UCJ|1|8|C|126
7UCJ|1|8|U|127
7UCJ|1|8|C|128
7UCJ|1|8|C|129

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

60S ribosomal protein L23a