3D structure

PDB id
7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAUCAGAUACC
Length
11 nucleotides
Bulged bases
7UCJ|1|9|U|1061
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7UCJ_102 not in the Motif Atlas
Geometric match to HL_5J7L_017
Geometric discrepancy: 0.0789
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

7UCJ|1|9|G|1054
7UCJ|1|9|A|1055
7UCJ|1|9|U|1056
7UCJ|1|9|C|1057
7UCJ|1|9|A|1058
7UCJ|1|9|G|1059
7UCJ|1|9|A|1060
7UCJ|1|9|U|1061
7UCJ|1|9|A|1062
7UCJ|1|9|C|1063
7UCJ|1|9|C|1064

Current chains

Chain 9
18S rRNA

Nearby chains

Chain 1
mRNA
Chain 2
Transfer RNA; tRNA
Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain Aa
eS26
Chain OO
40S ribosomal protein S14

Coloring options:


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