HL_7UCJ_107

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7UCJ|1|9|U|1300, 7UCJ|1|9|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_107 not in the Motif Atlas

Geometric match to HL_4V88_213

Geometric discrepancy: 0.2231

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7UCJ|1|9|A|1295
7UCJ|1|9|U|1296
7UCJ|1|9|U|1297
7UCJ|1|9|G|1298
7UCJ|1|9|A|1299
7UCJ|1|9|U|1300
7UCJ|1|9|A|1301
7UCJ|1|9|G|1302
7UCJ|1|9|C|1303
7UCJ|1|9|U|1304

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Dd

40S ribosomal protein S29

Chain PP

40S ribosomal protein S15