3D structure

PDB id
7UNR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CGGUGAAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7UNR_086 not in the Motif Atlas
Homologous match to HL_4LFB_015
Geometric discrepancy: 0.0838
The information below is about HL_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

7UNR|1|a|C|683
7UNR|1|a|G|684
7UNR|1|a|G|685
7UNR|1|a|U|686
7UNR|1|a|G|687
7UNR|1|a|A|688
7UNR|1|a|A|689
7UNR|1|a|A|690
7UNR|1|a|U|691
7UNR|1|a|G|692

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain g
30S ribosomal protein S7
Chain k
30S ribosomal protein S11
Chain u
30S ribosomal protein S21
Chain w
mRNA

Coloring options:


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