HL_7UNV_002

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGCAAACAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UNV_002 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3478

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7UNV|1|A|C|87
7UNV|1|A|G|88
7UNV|1|A|G|89
7UNV|1|A|C|90
7UNV|1|A|A|91
7UNV|1|A|A|92
7UNV|1|A|A|93
7UNV|1|A|C|94
7UNV|1|A|A|95
7UNV|1|A|G|96

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L29

Chain V

50S ribosomal protein L23

Chain W

50S ribosomal protein L24