HL_7UNV_055

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUCGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UNV_055 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1619

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7UNV|1|A|G|2290
7UNV|1|A|G|2291
7UNV|1|A|U|2292
7UNV|1|A|C|2293
7UNV|1|A|G|2294
7UNV|1|A|G|2295
7UNV|1|A|A|2296
7UNV|1|A|A|2297
7UNV|1|A|A|2298
7UNV|1|A|U|2299
7UNV|1|A|C|2300

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5