HL_7UNV_060

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UNV_060 not in the Motif Atlas

Geometric match to HL_4V9F_062

Geometric discrepancy: 0.1339

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7UNV|1|A|A|2458
7UNV|1|A|G|2459
7UNV|1|A|U|2460
7UNV|1|A|U|2461
7UNV|1|A|C|2462
7UNV|1|A|A|2463
7UNV|1|A|U|2464
7UNV|1|A|A|2465
7UNV|1|A|U|2466

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain G

50S ribosomal protein L6