3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GAU(2MG)(5MC)AACGC
Length
10 nucleotides
Bulged bases
7UPH|1|I|A|967, 7UPH|1|I|G|970
QA status
Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7UPH_021 not in the Motif Atlas
Homologous match to HL_5J7L_021
Geometric discrepancy: 0.2337
The information below is about HL_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7UPH|1|I|G|962
7UPH|1|I|A|963
7UPH|1|I|U|964
7UPH|1|I|2MG|965
7UPH|1|I|5MC|966
7UPH|1|I|A|967
7UPH|1|I|A|968
7UPH|1|I|C|969
7UPH|1|I|G|970
7UPH|1|I|C|971

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain A
30S ribosomal protein S14
Chain d
30S ribosomal protein S9
Chain e
30S ribosomal protein S10
Chain h
30S ribosomal protein S13

Coloring options:


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