HL_7UPH_021

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GAU(2MG)(5MC)AACGC

Length

10 nucleotides

Bulged bases

7UPH|1|I|A|967, 7UPH|1|I|G|970

QA status

Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_021 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.2337

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7UPH|1|I|G|962
7UPH|1|I|A|963
7UPH|1|I|U|964
7UPH|1|I|2MG|965
7UPH|1|I|5MC|966
7UPH|1|I|A|967
7UPH|1|I|A|968
7UPH|1|I|C|969
7UPH|1|I|G|970
7UPH|1|I|C|971

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain A

30S ribosomal protein S14

Chain d

30S ribosomal protein S9

Chain e

30S ribosomal protein S10

Chain h

30S ribosomal protein S13